Omics Standard Operating Procedures
This living document will illustrate Standard Operating Procedures (SOPs) for sampling biofilm material from reverse osmosis (RO) membrane modules. The SOPs will empower the NAWI research community to apply omics tools (e.g., time-series metagenomic, meta-transcriptomic, metaproteomic and metabolomic workflows) to fundamentally understand biofilm formation with unprecedented resolution (e.g., the transition from innocuous to detrimental biofilm) and mitigate biofouling in water treatment and distribution systems.
Citation Formats
TY - DATA
AB - This living document will illustrate Standard Operating Procedures (SOPs) for sampling biofilm material from reverse osmosis (RO) membrane modules. The SOPs will empower the NAWI research community to apply omics tools (e.g., time-series metagenomic, meta-transcriptomic, metaproteomic and metabolomic workflows) to fundamentally understand biofilm formation with unprecedented resolution (e.g., the transition from innocuous to detrimental biofilm) and mitigate biofouling in water treatment and distribution systems.
AU - May, Amanda
A2 - Stadler, Lauren
A3 - Podar, Mircea
A4 - Kumar, Manish
A5 - Alvarez, Pedro
DB - Open Energy Data Initiative (OEDI)
DP - Open EI | National Renewable Energy Laboratory
DO -
KW - NAWI
KW - desalination
KW - water
KW - Biofilms
KW - Omics analyses
KW - SOPs
KW - omics
KW - biofilm
KW - biofouling
KW - reverse osmosis
KW - membrane
KW - RO
KW - time-series
KW - meta-transcriptomic
KW - metagenomic
KW - metaproteomic
KW - metabolomic
KW - innocuous
KW - detrimental
KW - omic
LA - English
DA - 2021/01/18
PY - 2021
PB - Oak Ridge National Laboratory
T1 - Omics Standard Operating Procedures
UR - https://data.openei.org/submissions/6467
ER -
May, Amanda, et al. Omics Standard Operating Procedures. Oak Ridge National Laboratory, 18 January, 2021, NAWI. https://waterdams.nawihub.org/submissions/10.
May, A., Stadler, L., Podar, M., Kumar, M., & Alvarez, P. (2021). Omics Standard Operating Procedures. [Data set]. NAWI. Oak Ridge National Laboratory. https://waterdams.nawihub.org/submissions/10
May, Amanda, Lauren Stadler, Mircea Podar, Manish Kumar, and Pedro Alvarez. Omics Standard Operating Procedures. Oak Ridge National Laboratory, January, 18, 2021. Distributed by NAWI. https://waterdams.nawihub.org/submissions/10
@misc{OEDI_Dataset_6467,
title = {Omics Standard Operating Procedures},
author = {May, Amanda and Stadler, Lauren and Podar, Mircea and Kumar, Manish and Alvarez, Pedro},
abstractNote = {This living document will illustrate Standard Operating Procedures (SOPs) for sampling biofilm material from reverse osmosis (RO) membrane modules. The SOPs will empower the NAWI research community to apply omics tools (e.g., time-series metagenomic, meta-transcriptomic, metaproteomic and metabolomic workflows) to fundamentally understand biofilm formation with unprecedented resolution (e.g., the transition from innocuous to detrimental biofilm) and mitigate biofouling in water treatment and distribution systems.},
url = {https://waterdams.nawihub.org/submissions/10},
year = {2021},
howpublished = {NAWI, Oak Ridge National Laboratory, https://waterdams.nawihub.org/submissions/10},
note = {Accessed: 2025-05-23}
}
Details
Data from Jan 18, 2021
Last updated Mar 1, 2022
Submitted Jan 21, 2021
Organization
Oak Ridge National Laboratory
Contact
Frank Loeffler
865.974.4933
Authors
Original Source
https://waterdams.nawihub.org/submissions/10Keywords
NAWI, desalination, water, Biofilms, Omics analyses, SOPs, omics, biofilm, biofouling, reverse osmosis, membrane, RO, time-series, meta-transcriptomic, metagenomic, metaproteomic, metabolomic, innocuous, detrimental, omicDOE Project Details
Project Name NAWI Integrated Data and Analysis
Project Lead Melissa Klembara
Project Number 36496
